I can see another difference: new folders are created with 'nemo' group owner, instead older ones have 'privileged' group owner.
[nemo@localhost share]$ ls -ld harbour-webcat/{,harbour-webcat/}QML
drwxr-xr-x 1 nemo privileged 28 2014-01-11 17:17 harbour-webcat/QML
drwxr-xr-x 1 nemo nemo 28 2014-02-01 04:24 harbour-webcat/harbour-webcat/QML
Is this intentional? Do we have to change owner for older folders?
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